2024 Arabidopsis subcellular database

Arabidopsis subcellular database

Author: zwff

August undefined, 2024

WebThe DBSubLoc database has been built on annotations from primary protein sequence databases: Swiss-Prot/TrEMBL (10) and the Protein Information Resource (PIR) (11). Annotations were also provided by model organism genome projects such as the SGD (Saccharomyces cerevisiae) (12), TAIR (Arabidopsis thaliana) (13), FlyBase … Web18 gen 2024 · We tested the deep learning system across two datasets, the SUBcellular location database for Arabidopsis proteins (SUBA) 13 and another dataset that includes Crop Proteins with Annotated ...

LocDB: Subcellular Localization of proteins - Rostlab

WebThe aim of AraCyc is to represent Arabidopsis metabolism as completely as possible with a user-friendly Web-based interface. ... 170 pathways that include information on compounds, intermediates, cofactors, reactions, genes, proteins, and protein subcellular locations. The database uses Pathway Tools software, ... Web21 mar 2007 · The localization data in SUBA encompasses 10 distinct subcellular locations, >6743 non-redundant proteins and represents the proteins encoded in the transcripts responsible for 51% of Arabidopsis expressed sequence tags. It integrates Arabidopsis protein localization information from various sources, including at least … feather crop top white

SUBA -- the Arabidopsis Subcellular Database HSLS

WebAll subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database (Hooper et al., 2024). Additional protein function data is from MapMan (Usadel et al., … Web12 ago 2014 · The SUBcellular localization database for Arabidopsis proteins (SUBA; Heazlewood et al., 2005, 2007; Tanz et al., 2013) aggregates these datasets to combine … WebSystematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins Cells are organized … debunking the credit myths essay

The BAR and other Data Analysis Tools for Plant Biology

Arabidopsis antibody resources for functional studies in plants

Web31 dic 2009 · Protein-protein interactions (PPIs) constitute one of the most crucial conditions to sustain life in living organisms. To study PPI in Arabidopsis thaliana we have developed AtPIN, a database and web interface for searching and building interaction networks based on publicly available protein-protein interaction datasets. All interactions were divided … WebArabidopsis Mitochondrial Protein Database (Australia) A relational database of experimentally identified proteins from purified Arabidopsis mitochondria using LC … debunking the diet-heart hypothesisWeb18 set 2024 · The genome of the model plant Arabidopsis thaliana contains 44 annotated genes as part of the aminotransferase gene family (Liepman & Olsen, 2004). In this family, 8 of the 44 genes are annotated as putative alanine aminotransferases with the following loci tags: At2g13360, At4g39660, At2g38400, At1g23310, At1g70580, At1g17290, … feather crossword clue

"Web3 gen 2007 · We have undertaken to bring these various data sources together to build SUBA, a SUBcellular location database for Arabidopsis proteins. The localisation data in SUBA encompasses 10 distinct ... " - Arabidopsis subcellular database

Arabidopsis subcellular database

WebReconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-speciﬁcity Shira Mintz-Oron a, Sagit Meir , Sergey Malitsky , Eytan Ruppinb,c, Asaph Aharonia,1, and Tomer Shlomid,1 aDepartment of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel; bSchool of Computer … http://www.paper.edu.cn/scholar/showpdf/NUT2UN2INTD0ExeQh

Did you know?

Web13 dic 2016 · Subcellular Localisation database for Arabidopsis proteins version 4 Hooper, C. (Creator) & Castleden, I. (Creator), The University of Western Australia, 26 Oct 2016 DOI : 10.4225/23/581055ddcb1ce Web28 ott 2006 · The SUBA database provides a powerful means by which to assess protein subcellular localisation in Arabidopsis (Author Webpage). INTRODUCTION Genomic …

http://www.bar.utoronto.ca/ Web5 mag 2024 · The MEROPS peptidase database (Rawlings et al., 2024) ... The protein IDs and names are given along with the predicted subcellular localization based on the Arabidopsis Subcellular Database (SUBA), the predicted molecular weight (MW; kDa) and the protein domain structures (PFAMs) summarized as follows: M1a (PF17900); M1b ...

WebAbstract. The subcellular location database for Arabidopsis proteins (SUBA3, http://suba.plantenergy.uwa.edu.au) combines manual literature curation of large-scale … Web28 nov 2016 · ASURE––Arabidopsis SUbcellular REference, CoEx––coexpression, FP––fluorescent protein, MS––mass spectrometry, PPI––protein–protein interaction. SUBA4 query platform overview.

WebEukaryotic Promoter Database (EPD) Genevisible Expression Data The Subcellular Location of Proteins in Arabidopsis Database (SUBA) TraVA:Transcription Variation Analysis: Gene Families Links moved to Gene Families band [show me where] Genomics AceView Gramene MIPS NCBI-Entrez Gene Thalemine at BAR: Interactions BioGRID: …

WebePlant. ePlant helps biologists visualize the natural connections between DNA sequences, natural variation (polymorphisms), molecular structures, protein-protein interactions, and gene expression patterns by combining several data visualization tools with a zoomable user interface Waese et al. 2024. feather crop topWeb4 gen 2024 · The SUBcellular location database for Arabidopsis proteins (SUBA4, http://suba.live) is a comprehensive collection of manually curated published data sets of … debunking the magic of markets rd wolffWebFluorescent protein (FP) tagging approaches are widely used to determine the subcellular location of plant proteins. Here we give a brief overview of FP approaches, highlight potential technical problems, and discuss what to consider when designing FP/protein fusion constructs and performing transformation assays. We analyze published FP tagging data … debunking the pathology of poverty greenbaumWebArabidopsis (rockcress) is a genus in the family Brassicaceae.They are small flowering plants related to cabbage and mustard.This genus is of great interest since it contains … debunking traductionWeb4 gen 2024 · The SUBcellular location database for Arabidopsis proteins (SUBA4, ... SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. 2024 Jan 4;45(D1):D1064-D1074. … debunking the bell curve bookWeb26 ott 2016 · SUBA (http://suba.live/) is the central resource for Arabidopsis protein subcellular location data. Proteins have specific functions and locations within the plant … feather crochet stitch tutorialWeb18 gen 2024 · The database contains experimentally verified and predicted subcellular information relating to Arabidopsis proteins. feather crossword clue dan word