WebWe use ChIP-seq, RNA-seq, computational modeling to investigate how genes are regulated in cancer cells and how gene regulation in cancer cells differs from normal cells. Cancer genomics and precision medicine. Using novel computational algorithms, we seek to identify new cancer mutations and understand why and where cancer mutations occur. WebChIPseeqer: ChIPseeqer is an integrative and comprehensive framework that allows the users to perform in-depth analysis of ChIP-seq datasets through easily customized …
ChIPseeker: an R package for ChIP peak Annotation, Comparison and
WebDec 9, 2010 · EZH2 and H3K27me3 ChIP-seq data in hESCs was obtained from a published study. 18 ChIP-seq peaks were detected using ChIPseeqer (manuscript in preparation) with significance threshold for peaks set using −t = 5. To compare ChIP-chip and ChIP-seq data, the approximately 1.5-kb regions covered for each promoter in the … WebJul 7, 2011 · Results: To address the peak interpretation challenge, we have developed ChIPseeqer, an integrative, comprehensive, fast and user-friendly computational framework for in-depth analysis of ChIP-seq datasets. dra karina endocrinologista macaé
ChIP-seq PowerPoint Presentation, free download - SlideServe
WebC ChIPseeqer-2.2 Project information Project information Activity Labels Members Repository Repository Files Commits Branches Tags Contributor statistics Graph Compare revisions Issues 0 Issues 0 List Boards Service Desk Milestones Merge requests 0 Merge requests 0 Deployments Deployments Releases Monitor Monitor Incidents Analytics … WebJul 31, 2014 · ChIP-seq methodology Abcam H3K9Me3 rabbit polyclonal (ab8898) • Identify ChIP-grade antibody, determine specificity (Western, histone peptide array) • Optimize conditions using single-locus ChIP-PCR (positive and negative controls) • Sequence ChIP product using 1 Illumina lane per sample (no TruSeqChIP-seq), single end • Sequence … WebSep 10, 2024 · ChIPseeqer peak detection algorithm ( http://icb.med.cornell.edu/wiki/index.php/Elementolab/) was used for analyzing ChIP-seq … dra karina landin romero